Amazing article on Molecular dynamics, in the infinite number of things they could add is a small segment on coarse graining. Though I'm biased (and have been thinking about writing one myself).
Granted wished this had been around when I started my journey instead of having to delve into things like the Amber manual... (which I will grant is wonderful for its information but the organization isn't as convenient).
Author here, I wish I added a section on coarse graining as well :) hope you write a post about it!
Hi,
Do you have any resources that you recommend on coarse graining?
I am really interested in the topic.
Depends on how deep you want to go. The pioneering work in this field is the "The multiscale coarse-graining method." series of papers kicked off by Noid. Who is still a person to pay attention to in this field.
I also believe the work of Frank Noe is someone to watch for in the ML potential space for proteins.
I'm also always happy to talk about CG.
How do I get in touch?
My email OTOH is in my bio.
I am currently working on CG potentials. Can really recommend the basics from Gregory A. Voth.